DNA-diagnostics

Information DNA testing

Within DNA diagnostics, molecular gene analysis (Sanger sequencing) is offered for inborn errors of metabolism. The genes are listed in tables ordered by group of disorders and in a table in alphabetical order.

Materials

Genomic DNA

  • Conditions (store and shipment): Room temperature.
  • Specifics: Minimum amount of genomic DNA for whole gene analysis is 5 microgram per gene. DNA samples should be sent in clearly labeled (with name of patient and date of birth), tightly capped tubes at room temperature and preferably by courier service. Samples need to arrive in our laboratory within 48 hours. Please complete the test request form and send it along with the sample.

Whole blood

  • Conditions (store and shipment): Room temperature.
  • Specifics: 1-3 ml EDTA blood should be sent AT ROOM TEMPERATURE in clearly labeled (with name of patient and date of birth), tightly capped tubes, wrapped in protective material, placed in a sealed plastic bag and shipped by courier service in a Styrofoam shipping box. Blood samples need to arrive in our laboratory within 48 hours after drawing. Please complete the test request form and send it along with the sample.

Cultured skin fibroblasts, chorionic villi cells or amniocytes

  • Conditions (store and shipment): Room temperature.
  • Specifics: Grow cells to near confluence (~ 80% confluent) in a T-25 flask, fill the flask completely with sterile buffered (with 25mM Hepes) culture medium supplemented with serum and penicilline-streptomycine. Cap the flasks tightly and wrap the cap with parafilm. Label the flask clearly (with name of patient, date of birth and date of collection), wrap the culture flaks in protective material and place it in a sealed plastic bag in a Styrofoam shipping box and ship AT ROOM TEMPERATURE by courier service. The cultured cells need to arrive in our laboratory within 48 hours. Please complete the test request form and send it along with the sample.

Chorionic villus sample

  • Conditions (store and shipment): Room temperature.
  • Specifics: Chorionic villus samples should be sent in a 15 ml conical tube filled with sterile culture medium. Cap the tube tightly and wrap the cap with parafilm. Label the tube clearly (with name of patient, date of birth and date of collection), wrap the tube in protective material and place it in a sealed plastic bag in a Styrofoam shipping box and ship AT ROOM TEMPERATURE by courier service. The sample needs to arrive in our laboratory within 48 hours. Please complete the test request form and send it along with the sample.

TAT

Postnatal analysis < 1 months
Prenatal analysis < 2 weeks
Urgent analysis * 1-3 weeks

* Urgent analysis in consultation for specific indications (e.g. treatment consequences and newborn screening)

Price

Whole gene analysis see table with genes (below):
DNA sequence analysis € 888
MLPA € 611

Carrier analysis € 389
Prenatal analysis € 611

The prices listed are for non-profit organizations only. In case of requests made by other types of organizations, please contact us.

Genes (a-z)

For a complete list of genes in alphabetical order click here.

Genes in groups of metabolic disorders:

Amino acid metabolism and transport (DNA)

Name Gene OMIM
Argininosuccinate lyase deficiency ASL 207900
BolA family member 3 deficiency BOLA3 614299
Branched chain aminotransaminase 2 deficiency BCAT2 618850
Carbamylphosphate synthase 1 deficiency CPS1 237300
Citrullinemia, type 1 ASS1 215700
Citrullinemia, type 2 SLC25A13 603471
Cystathionine beta-synthase deficiency CBS 236200
Dihydrolipoamide dehydrogenase deficiency/ MSUD type 3 DLD 246900
Phenylketonuria/Hyperphenylalaninemia, non-PKU mild PAH 261600
Glutaminase deficiency GLS 138280
Glutamate dehydrogenase-1 deficiency GLUD1 606762
Glutaredoxin 5 deficiency GLRX5 616859
Glycine N-methyltransferase deficiency GNMT 606664
Glycine transporter 1 deficiency SLC6A9 617301
Glycine transporter 2 deficiency SLC6A5 614618
Hartnup disorder SLC6A19 234500
HMG-CoA lyase deficiency/ 3-Hydroxy-3-methylglutaryl-CoA lyase deficiency HMGCL 246450
3-Hydroxyisobutyrate dehydrogenase deficiency HIBADH 608475
3-Hydroxyisobutyryl-CoA hydrolase deficiency HIBCH 250620
Hyperlysinemia AASS 238700
Hyperphenylalaninemia, mild, non-BH4-deficient DNAJC12 617384
Isovaleryl-CoA dehydrogenase deficiency /Isovaleric acidemia IVD 243500
Lipoic Acid synthase deficiency LIAS 614462
Lysinuric protein intolerance SLC7A7 222700
Maple syrup urine disease, type Ia BCKDHA 248600
Maple syrup urine disease, type Ib BCKDHB 248600
Maple syrup urine disease, type 2 DBT 248600
Methionine adenosyltransferase deficiency MAT1A 250850
2-Methyl-3-hydroxybutyryl-CoA dehydrogenase deficiency HSD17B10 300438
3-Methylcrotonyl-CoA carboxylase (MCC) deficiency MCCC1 210200
3-Methylcrotonyl-CoA carboxylase (MCC) deficiency MCCC2 210210
3-Methylglutacon aciduria type I AUH 250950
Multiple mitochondrial dysfunctions syndrome 1 NFU1 605711
N-acetylglutamate synthase deficiency NAGS 237310
NKH: Aminomethyltransferase deficiency AMT 605899
NKH: Glycine cleavage system H-protein deficiency GCSH 605899
NKH: Glycine decarboxylase deficiency GLDC 605899
Ornithine aminotransferase deficiency OAT 258870
Ornithine transcarbamylase deficiency OTC 311250
Phosphoglycerate dehydrogenase deficiency PHGDH 601815
Phosphoserine aminotransferase 1 deficiency PSAT1 610936
Phosphoserine phosphatase deficiency PSPH 614023
S-adenosylhomocysteine hydrolase (SAHH) deficiency AHCY 613752
Short-chain enoyl-CoA hydratase/Crotonase deficiency ECHS1 602292
Sulfite oxidase deficiency SUOX 272300

Aminoacyl tRNA synthetases (Mitochondrial) (DNA)

Naam Gen OMIM
Alanyl-tRNA synthetase 2 AARS2 612035
Arginyl-tRNA synthetase 2 RARS2 611524
Asparaginyl-tRNA synthetase 2 NARS2 612803
Aspartyl-tRNA synthetase 2 deficiency / Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation "LBSL" DARS2 611105
Cysteinyl-tRNA synthetase 2 CARS2 612800
Glutamyl-t-RNA synthetase 2 deficiency / Leukoencephalopathy with thalamus and brainstem involvement and high lactate "LTBL" EARS2 612799
Histidyl-tRNA synthetase 2 HARS2 600783
Isoleucyl-tRNA synthetase 2 IARS2 612801
Leucyl-tRNA synthetase 2 LARS2 604544
Methionyl-tRNA synthetase 2 MARS2 609728
Phenylalanyl-tRNA synthetase 2 FARS2 611592
Prolyl-tRNA synthetase 2 PARS2 612036
Seryl-tRNA synthetase 2 SARS2 612804
Threonyl-tRNA synthetase 2 TARS2 612805
Tryptophanyl-tRNA synthetase 2 WARS2 604733
Tyrosyl-tRNA synthetase 2 YARS2 610957
Valyl-tRNA synthetase 2 VARS2 612802

Aminoacyl tRNA synthetases (Cytoplasmatic) (DNA)

Name Gene OMIM
Alanyl-tRNA synthetase 1 AARS1 601065
Arginyl-tRNA synthetase 1 RARS1 107820
Asparaginyl-tRNA synthetase 1 NARS1 108410
Aspartyl-tRNA synthetase 1 deficiency / Hypomyelinisation with brainstem and spinal cord involvement and leg spasticity "HBSL" DARS1 615281
Cysteinyl-tRNA synthetase 1 CARS1 123859
Glutamyl-Prolyl-tRNA synthetase 1 EPRS1 138295
Glutaminyl-tRNA synthetase 1 QARS1 603727
Glycyl-tRNA synthetase 1 GARS1 600287
Histidyl-tRNA synthetase 1 HARS1 142810
Isoleucyl-tRNA synthetase 1 IARS1 600709
Leucyl-tRNA synthetase 1 LARS1 151350
Lysyl-tRNA synthetase 1 KARS1 601421
Phenylalanyl-tRNA synthetase, alpha subunit FARSA 602918
Phenylalanyl-tRNA synthetase, beta subunit FARSB 609690
Seryl-tRNA synthetase 1 SARS1 607529
Threonyl-tRNA synthetase 1 TARS1 187790
Tryptophanyl-tRNA synthetase 1 WARS1 191050
Tyrosyl-tRNA synthetase 1 YARS1 603623
Valyl-tRNA synthetase 1 VARS1 192150

Aminoacyl tRNA synthetases (related) (DNA)

Name Gene OMIM
Aminoacyl-tRNA synthetase complex-interactive multifunctional protein 1 AIMP1 603605
Aminoacyl-tRNA synthetase complex-interactive multifunctional protein 2 AIMP2 600859
D-tyrosyl-tRNA deacylase DTD1 610996
Eukaryotic translation elongation factor epsilon EEF1E1 609206
Threonyl-tRNA synthetase-like 2 TARSL2

Carbohydrate metabolism and transport (DNA)

Name Gene OMIM
Fructokinase/ Ketohexokinase deficiency KHK 229800
Fructose intolerance, hereditary ALDOB 229600
Fructose-1,6-biphosphatase-1 deficiency FBP1 229700
Galactokinase deficiency GALK1 230200
Galactosemia GALT 230400
Galactosemia type 4 GALM 618881
Glucose transporter 1 (GLUT1) deficiency SLC2A1 606777
Glucose-6-phosphate dehydrogenase deficiency G6PD 300908
Glycogen storage disease type IV GBE1 232500
Glycogen storage disease type VII (Tauri) PFKM 232800
Glycogen storage disease type 0 GYS2 240600
Phosphoglycerate mutase deficiency, muscle PGAM2 261670
Ribose 5-phosphate isomerase deficiency RPIA 180430
Sedoheptulokinase deficiency SHPK 617213
Transaldolase deficiency TALDO1 606003
Transketolase deficiency TKT 606781
Triosephosphate isomerase deficiency TPI1 190450

Creatine metabolism and transport (DNA)

Name Gene OMIM
Arginine:glycine amidinotransferase (AGAT) deficiency GATM 612718
Creatine transporter defect, X-linked SLC6A8 300352
Guanidinoacetate methyltransferase deficiency GAMT 612736
Monocarboxylate transporter 12 deficiency SLC16A12 611910

Cholesterol/Isoprenoïd biosynthesis (DNA)

Name Gene OMIM
CHILD syndrome NSDHL 308050
Conradi-Hünermann-Happle syndrome/CDPX2 EBP 302960
Desmosterolosis DHCR24 602398
Greenberg skeletal dysplasia LBR 215140
Hyper IgD syndrome/ Mevalon aciduria/ Mevalonic kinase deficiency MVK 260920
Lathosterolosis SC5DL 607330
Smith-Lemli-Opitz Syndrome DHCR7 270400

GABA metabolism (DNA)

Name Gene OMIM
GABA-transaminase (GABA-T) deficiency ABAT 613163
Succinic semialdehyde dehydrogenase (SSADH) deficiency ALDH5A1 271980

Hypophosphatemic rickets (DNA)

Name Gene OMIM
Dentin matrix acidic phosphoprotein 1 deficiency DMP1 600980
Ectonucleotide pyrophosphatase/phosphodiesterase 1 deficiency ENPP1 173335
Hypophosphatemic rickets, X-linked dominant PHEX 307800
Sodium phosphate cotransporter, member 3 deficiency SLC34A3 241530

Ketolysis defects (DNA)

Naam Gen OMIM
Monocarboxylate transporter member 1 (MCT1) deficiency SLC16A1 600682
ß-Ketothiolase deficiency ACAT1 607809
Succinyl CoA:3-oxoacid CoA transferase (SCOT) deficiency OXCT1 245050

Lysosomal storage diseases (DNA)

Name Gene OMIM
Arylsulfatase A deficiency ARSA 250100
Galactosialidosis CTSA 256540
Glycogen storage disease type II/ Pompe disease GAA 232300
GM1-gangliosidosis GLB1 230500
Krabbe disease GALC 245200
Lysosomal acid lipase deficiency LIPA 278000
Mannosidase, beta A, lysosomal deficiency MANBA 609489
Mannosidosis, alpha-, type I en II MAN2B1 248500
Mucolipidosis type IV/ Mucolipin-1 deficiency MCOLN1 252650
Mucopolysacharidose type III/ Sanfilippo type A SGSH 252900
Mucopolysaccharidosis type IIIB/ Sanfilippo type B NAGLU 252920
Neuraminidase deficiency/ Sialidosis NEU1 608272
Sulfatase modifying factor 1 deficiency/ Multiple sulfatase deficiency SUMF1 272200
Tay-Sachs disease HEXA 272800

Mitochondrial fatty acid oxidation (DNA)

Name Gene OMIM
Carnitine-acylcarnitine translocase (CACT) deficiency SLC25A20 212138
Carnitine deficiency, primary/OCTN2 SLC22A5 212140
Carnitine palmitoyltransferase 1 deficiency CPT1A 255120
Carnitine palmitoyltransferase 2 deficiency CPT2 600649
Medium-chain acyl-CoA dehydrogenase deficiency ACADM 201450
Mitochondrial trifunctional protein deficiency (LCHAD deficiency included) HADHA 609015
Mitochondrial trifunctional protein deficiency HADHB 609015
Multiple acyl-CoA dehydrogenase deficiency ETFA 231680
Multiple acyl-CoA dehydrogenase deficiency ETFB 231680
Multiple acyl-CoA dehydrogenase deficiency ETFDH 231680
Short-chain acyl-CoA dehydrogenase deficiency ACADS 201470
Very long-chain acyl-CoA dehydrogenase deficiency ACADVL 201475

Neurotransmitter metabolism (DNA)

Name Gene OMIM
Aromatic amino acid decarboxylase deficiency DDC 608643
GTP cyclohydrolase I deficiency GCH1 233910
Tyrosine hydroxylase deficiency TH 191290

Organic acidurias (DNA)

Name Gene OMIM
Acyl-CoA synthetase family, member 3 deficiency ACSF3 614265
Canavan disease ASPA 271900
Ethylmalon aciduria (Ethylmalon encephalopathy) ETHE1 602473
Glutaric aciduria type 1 GCDH 231670
D-2- and L-2-hydroxyglutaric aciduria/ Mitochondrial citrate transporter SLC25A1 615182
D-2-hydroxyglutaric aciduria and metaphyseal chondromatosis IDH1 147700
D-2-hydroxyglutaric aciduria, type 1 D2HGDH 600721
D-2-hydroxyglutaric aciduria, type 2 IDH2 613657
L-2-hydroxyglutaric aciduria L2HGDH 236792
2-Methylbutyryl glycinuria / 2-Methylbutyryl-CoA dehydrogenase deficiency ACADSB 610006
3-Methylglutacon aciduria type 3 / Optic atrophy 3 OPA3 258501
3-Methylglutaconyl-CoA hydratase deficiency / 3-Methylglutaconic aciduria type I AUH 250950
Methylmalonyl-CoA epimerase deficiency MCEE 251120
Mitochondrial DNA depletion syndrome 2 SUCLA2 603921
Malonyl-CoA-decarboxylase deficiency MLYCD 248360
Methylmalonate semialdehyde dehydrogenase deficiency ALDH6A1 614105
Methylmalonyl CoA mutase deficiency MMUT 609058
Propionyl CoA carboxylase alpha subunit deficiency PCCA 606054
Propionyl CoA carboxylase beta subunit deficiency PCCB 606054
Succinate-CoA ligase SUCLG1 611224

Peroxisomal metabolism (DNA)

Name Gene OMIM
Acyl-CoA oxidase deficiency ACOX1 264470
Complementation analysis PEX gene unknown 214100
D-Bifunctional protein (DBP) deficiency HSD17B4 261515
α-methylacyl-CoA racemase AMACR 604489
Refsum disease PEX7 614879
Refsum disease PHYH / PAHX 266500
Rhizomelic chondrodysplasia punctata type 1 PEX7 215100
Rhizomelic chondrodysplasia punctata type 2 GNPAT 222765
Rhizomelic chondrodysplasia punctata type 3 AGPS 600121
X-linked adrenoleukodystrophy, X-ALD ABCD1 300100
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX1 602136
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX2 170993
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX3 603164
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX5 600414
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX6 601498
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX10 602859
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX11β 603867
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX12 601758
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX13 601789
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX14 601791
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX16 603360
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX19 600279
Zellweger spectrum (Zellweger syndrome, NALD, IRD) PEX26 608666

Purine and pyrimidine metabolism (DNA)

Name Gene OMIM
Adenine phosphoribosyl transferase deficiency APRT 102600
Adenosine deaminase deficiency ADA 102700
Adenosine deaminase 2 deficiency ADA2 607575
Adenosine kinase deficiency ADK 614300
Adenylosuccinate lyase deficiency ADSL 103050
Dihydropyrimidinase deficiency DPYS 222748
Dihydropyrimidine dehydrogenase deficiency DPYD 274270
Hypoxanthine-guanine phosphoribosyltransferase deficiency HPRT1 300322
Inosine triphosphatase deficiency ITPA 613850
Phosphoribosyl pyrophosphate synthetase superactivity and deficiency PRPS1 300661
Purine nucleoside phosphorylase deficiency PNP 164050
Thymidine phosphorylase deficiency TYMP 603041
ß-Ureidopropionase deficiency UPB1 606673

Vitamin, co-factor and metal defects (DNA)

Name Gene OMIM
Brown-Vialetto-Van Laere syndrome, type 1 SLC52A3 211530
Brown-Vialetto-Van Laere syndrome, type 2 SLC52A2 614707
Brown-Vialetto-Van Laere syndrome, type 3 SLC52A1 607883
Ceruloplasmine deficiency / Ferroxidase CP 604290
Cytosolic iron-sulfur assembly component CIAO1 604333
Dihydrofolate reductase deficiency DHFR 613839
Flavin adenine dinucleotide synthetase (FADS) deficiency FLAD1 255100
Folate malabsorption, hereditary SLC46A1 229050
Folate transport deficiency FOLR1 613068
Gastric intrinsic factor deficiency GIF 261000
Holocarboxylase synthetase deficiency HLCS 253270
Hypercarotenemia and vitamin A deficiency BCO1 115300
Hyperfenylalaninemia, BH4-deficiency, A PTS 261640
Hyperfenylalaninemie, BH4-deficiency, C / Dihydropteridine reductase deficiency QDPR 261630
Imerslund-Grasbeck syndrome 2/ Megaloblastic anemia, Norwegian type AMN 618882
Methylenetetrahydrofolate dehydrogenase 1 deficiency MTHFD1 601643
Methylenetetrahydrofolate reductase deficiency MTHFR 236250
Methylmalonic aciduria and homocysteinemia, cblX type (X-linked) HCFC1 309541
Methylmalonic aciduria and homocystinuria, cblC type MMACHC 277400
Methylmalonic aciduria and homocystinuria, cblD type MMADHC 277410
Methylmalonic aciduria and homocystinuria, cblF type LMBRD1 277380
Methylmalonic aciduria and homocystinuria, cblJ type ABCD4 614857
Methylmalonic aciduria, vitamin B12 responsive, cblA type MMAA 607481
Methylmalonic aciduria, vitamin B12 responsive, cblB type MMAB 607568
Methylmalonic aciduria, vitamin B12 responsive, transcobalamin receptor defect TCbIR 613646
5-Methyltetrahydrofolate-homocysteine methyltransferase deficiency, type cblG MTR 156570
5-Methyltetrahydrofolate-homocysteine methyltransferase reductase deficiency, type cblE MTRR 602568
Molybdenum cofactor deficiency, type A MOCS1 252150
Molybdenum cofactor deficiency, type B MOCS2 252160
Molybdenum cofactor deficiency, type C GPHN 615501
Pyridoxal phosphate binding protein PLPBP 617290
Pyridoxamine 5'-phosphate oxidase deficiency PNPO 610090
Pyridoxine dependent epilepsy ALDH7A1 266100
Thiamine transporter deficiency SLC19A3 607483
Zinc transporter deficiency/ Acrodermatitis enteropathica SLC39A4 201100

Other defects (DNA)

Name Gene OMIM
Alexander disease GFAP 203450
Alkaline phospatase, liver deficiency ALPL 146300, 241500, 241510
B-Cell receptor associated protein 31 deficiency BCAP31 300398
Biotinidase deficiency BTD 609019
Carbonic anhydrase VA deficiency CA5A
Chitotriosidase deficiency c.1049_1072dup CHIT1 614122
Collectrin/ Transmembrane protein 27 TMEM27
Congenital disorder of glycosylation,CDG type IIh COG8 611182
Galactosyltransferase 1/ Congenital disorder of glycosylation, type IId B4GALT1 607091
Galzuur synthese defect, congenitaal 1 HSD3B7 607764
Hyperoxaluria and nephrolithiasis SLC26A6 610068
Hyperoxaluria type 1 AGXT 259900
Hyperoxaluria type 2 GRHPR 260000
Hyperoxaluria type 3 HOGA1 613616
Phosphatidylinositol 4-kinase deficiency PI4KA 616531
Rhabdomyolysis, acute recurrent LPIN1 268200
Sjögren-Larsson syndrome ALDH3A2 270200
LIPIN 3 LPIN3
Majeed syndrome LPIN2 609628
Neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (NEDHSB) /Spermatogenesis-associated protein 5 deficiency SPATA5 616577
Nucleotide-binding protein-like protein deficiency NUBPL 613621
Sodium-dependent citrate transporter, member 5 deficiency SLC13A5 615905
Spermine synthase deficiency/ Snyder-Robinson type SMS 309583